# DREME 4.8.0
# command:   dreme -v 1 -oc memechip_out/dreme_out -p memechip_out/seqs-centered -n memechip_out/seqs-shuffled -png
# host:      tlb-takumi-lt.imb.uq.edu.au
# when:      Tue Jan 17 12:32:44 EST 2012
# positives: 820
#      from: memechip_out/seqs-centered (Tue Jan 17 12:10:14 EST 2012)
# negatives: 820
#      from: memechip_out/seqs-shuffled (Tue Jan 17 12:10:18 EST 2012)


MEME version 4.8.0

ALPHABET= ACGT

strands: + -

Background letter frequencies (from dataset):
A 0.246 C 0.253 G 0.250 T 0.251

MOTIF MCRCCCW

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     MCRCCCW    WGGGYGK        384         77   6.7e-068   2.2e-063
#          ACACCCA    TGGGTGT         99         12   1.5e-019   4.9e-015
#          ACACCCT    AGGGTGT         93         18   1.8e-014   6.0e-010
#          ACGCCCT    AGGGCGT         45          3   3.8e-011   1.3e-006
#          ACGCCCA    TGGGCGT         39          2   2.6e-010   8.5e-006
#          CCACCCA    TGGGTGG         69         19   1.8e-008   5.8e-004
#          CCGCCCT    AGGGCGG         31          5   5.3e-006   1.7e-001
#          CCACCCT    AGGGTGG         49         16   1.8e-005   5.9e-001
#          CCGCCCA    TGGGCGG         21          5   1.2e-003   3.8e+001

letter-probability matrix: alength= 4 w= 7 nsites= 474 E= 2.2e-063
0.632911 0.367089 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.710970 0.000000 0.289030 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.508439 0.000000 0.000000 0.491561


MOTIF TTATCW

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TTATCW     WGATAA        255         49   6.0e-042   1.9e-037
#           TTATCT     AGATAA        157         20   1.2e-030   4.0e-026
#           TTATCA     TGATAA        114         29   1.9e-014   6.0e-010

letter-probability matrix: alength= 4 w= 6 nsites= 285 E= 1.9e-037
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.424561 0.000000 0.000000 0.575439


MOTIF ARATA

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ARATA      TATYT        227        140   1.6e-007   5.0e-003
#            AGATA      TATCT        135         73   2.6e-006   8.3e-002
#            AAATA      TATTT        108         76   7.6e-003   2.4e+002

letter-probability matrix: alength= 4 w= 5 nsites= 259 E= 5.0e-003
1.000000 0.000000 0.000000 0.000000
0.436293 0.000000 0.563707 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCMCACCC

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCMCACCC   GGGTGKGG         29          2   1.9e-007   5.7e-003
#         CCCCACCC   GGGTGGGG         14          0   5.8e-005   1.8e+000
#         CCACACCC   GGGTGTGG         15          2   1.1e-003   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 5.7e-003
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.517241 0.482759 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACAGMTG

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ACAGMTG    CAKCTGT         65         20   2.7e-007   8.2e-003
#          ACAGATG    CATCTGT         27          6   1.4e-004   4.3e+000
#          ACAGCTG    CAGCTGT         38         14   5.0e-004   1.5e+001

letter-probability matrix: alength= 4 w= 7 nsites= 66 E= 8.2e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.409091 0.590909 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000